ENCORE eCLIP:676

RBFOX2 eCLIP in K562

Experiment Information (Status: Released)

	676	676-control
Exp_UID	676	676
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR756CKJ	ENCSR051IXX
ENCODE_alias	gene-yeo:676	gene-yeo:676-control
RBP	RBFOX2	RBFOX2
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB592TEY	ENCAB592TEY
Antibody	A300-864A	A300-864A
Lot_num	2	2
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	347	370

Replicate Information


Rep_UID	668_01	668_02	668_INPUT
Exp UID	676	676	676
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB686DSK	ENCLB465NBM	ENCLB155MEP
ENCODE_alias	gene-yeo:668_01	gene-yeo:668_02	gene-yeo:668_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	676	676-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	668_01	668_02	668_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	668_01	668_02	668_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	505	505	506
i7_barcode	702	702	701

Sequencing Information


Rep_UID	668_01	668_02	668_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/676.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	676	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
676.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	676	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4137_CLIP1_rep1.vs.4137_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF161ENB	file_finalPeaks	eCLIP	4137	Released	ENCODE4
gene-yeo:4040_CLIP1_rep1.vs.4040_CLIP2_rep2.sorted.nh.bb	ENCFF588BHZ	file_finalPeaks_bb	eCLIP	4137	Released	ENCODE4
gene-yeo:4217_CLIP1_rep1.vs.4217_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF768WOD	file_finalPeaks	eCLIP	4217	Released	ENCODE4
gene-yeo:4044_CLIP1_rep1.vs.4044_CLIP2_rep2.sorted.nh.bb	ENCFF908EEH	file_finalPeaks_bb	eCLIP	4217	Released	ENCODE4