ENCORE eCLIP:652

SUGP2 eCLIP in HepG2

Experiment Information (Status: Released)

	652	652-control
Exp_UID	652	652
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR506UPY	ENCSR895TTM
ENCODE_alias	gene-yeo:652	gene-yeo:652-control
RBP	SUGP2	SUGP2
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB433XTU	ENCAB433XTU
Antibody	A301-607A	A301-607A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	342	365

Replicate Information


Rep_UID	650_01	650_02	650_INPUT
Exp UID	652	652	652
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB750SUK	ENCLB697VFO	ENCLB584FIB
ENCODE_alias	gene-yeo:650_01	gene-yeo:650_02	gene-yeo:650_INPUT
Biosample Name	HepG2_091615	HepG2_012016	HepG2_091615
Biosample_ENCODE_Accession	ENCBS621TAB	ENCBS074YUC	ENCBS621TAB
Biosample_ENCODE_Alias	gene-yeo:HepG2_091615	gene-yeo:HepG2_012016	gene-yeo:HepG2_091615
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-09-16	2016-01-20	2015-09-16
Culture_End_Date	2015-10-09	2016-02-17	2015-10-09
Passage	3	4	3

QC Stats

Experiment QC

	652	652-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	650_01	650_02	650_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	650_01	650_02	650_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	501	501	502
i7_barcode	706	706	705

Sequencing Information


Rep_UID	650_01	650_02	650_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/652.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	652	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
652.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	652	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4221_CLIP1_rep1.vs.4221_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF981MMO	file_finalPeaks	eCLIP	4221	Released	ENCODE4
gene-yeo:4012_CLIP1_rep1.vs.4012_CLIP2_rep2.sorted.nh.bb	ENCFF209MVZ	file_finalPeaks_bb	eCLIP	4221	Released	ENCODE4