ENCORE eCLIP:649

FASTKD2 eCLIP in HepG2

Experiment Information (Status: Released)

	649	649-control
Exp_UID	649	649
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR023UHL	ENCSR671FKF
ENCODE_alias	gene-yeo:649	gene-yeo:649-control
RBP	FASTKD2	FASTKD2
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB541LFT	ENCAB541LFT
Antibody	A303-788A	A303-788A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	340	363

Replicate Information


Rep_UID	632_01	632_02	632_INPUT
Exp UID	649	649	649
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB648CVW	ENCLB287CLY	ENCLB215DZE
ENCODE_alias	gene-yeo:632_01	gene-yeo:632_02	gene-yeo:632_INPUT
Biosample Name	HepG2_091615	HepG2_111915	HepG2_091615
Biosample_ENCODE_Accession	ENCBS621TAB	ENCBS492SDY	ENCBS621TAB
Biosample_ENCODE_Alias	gene-yeo:HepG2_091615	gene-yeo:HepG2_111915	gene-yeo:HepG2_091615
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-09-16	2015-11-19	2015-09-16
Culture_End_Date	2015-10-09	2015-12-10	2015-10-09
Passage	3	4	3

QC Stats

Experiment QC

	649	649-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	632_01	632_02	632_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	632_01	632_02	632_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	506	506	505
i7_barcode	703	703	704

Sequencing Information


Rep_UID	632_01	632_02	632_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/649.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	649	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
649.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	649	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4012_CLIP1_rep1.vs.4012_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF260ZOK	file_finalPeaks	eCLIP	4012	Released	ENCODE4
gene-yeo:4004_CLIP1_rep1.vs.4004_CLIP2_rep2.sorted.nh.bb	ENCFF195FLX	file_finalPeaks_bb	eCLIP	4012	Released	ENCODE4