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ZC3H11A
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
641
641-control
Exp_UID
641
641
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR907GUB
ENCSR098VKQ
ENCODE_alias
gene-yeo:641
gene-yeo:641-control
RBP
ZC3H11A
ZC3H11A
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB686PBA
ENCAB686PBA
Antibody
A301-524A
A301-524A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
301
331
Replicate Information
Rep_UID
641_02
641_INPUT
641_01
Exp UID
641
641
641
Replicate_type
rep2
control
rep1
ENCODE_ACCESSION
ENCLB756WIQ
ENCLB239DMS
ENCLB122ZTE
ENCODE_alias
gene-yeo:641_01
gene-yeo:641_02
gene-yeo:641_INPUT
Biosample Name
HepG2_012016
HepG2_091615
HepG2_091615
Biosample_ENCODE_Accession
ENCBS074YUC
ENCBS621TAB
ENCBS621TAB
Biosample_ENCODE_Alias
gene-yeo:HepG2_012016
gene-yeo:HepG2_091615
gene-yeo:HepG2_091615
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2016-01-20
2015-09-16
2015-09-16
Culture_End_Date
2016-02-17
2015-10-09
2015-10-09
Passage
4
3
3
QC Stats
Experiment QC
641
641-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
641_02
641_INPUT
641_01
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
641_02
641_INPUT
641_01
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A03
none
A04
inline_barcode_2
G07
none
F05
i5_barcode
505
506
505
i7_barcode
702
701
702
Sequencing Information
Rep_UID
641_02
641_INPUT
641_01
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/641.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
641
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
641.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
641
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=641)
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