ENCORE eCLIP:632

SUB1 eCLIP in HepG2

Experiment Information (Status: Released)

	632	632-control
Exp_UID	632	632
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR406OOZ	ENCSR641PRC
ENCODE_alias	gene-yeo:632	gene-yeo:632-control
RBP	SUB1	SUB1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB835QRD	ENCAB835QRD
Antibody	A301-161A	A301-161A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	339	362

Replicate Information


Rep_UID	610_01	610_02	610_INPUT
Exp UID	632	632	632
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB872GYN	ENCLB855VXV	ENCLB820NGL
ENCODE_alias	gene-yeo:610_01	gene-yeo:610_02	gene-yeo:610_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	632	632-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	610_01	610_02	610_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	610_01	610_02	610_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	501	501	502
i7_barcode	704	704	703

Sequencing Information


Rep_UID	610_01	610_02	610_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/632x.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	632	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
632x.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	632	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4006_CLIP1_rep1.vs.4006_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF318RSO	file_finalPeaks	eCLIP	4006	Released	ENCODE4
gene-yeo:4001_CLIP1_rep1.vs.4001_CLIP2_rep2.sorted.nh.bb	ENCFF413VKU	file_finalPeaks_bb	eCLIP	4006	Released	ENCODE4
gene-yeo:4010_CLIP1_rep1.vs.4010_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF286AXW	file_finalPeaks	eCLIP	4010	Released	ENCODE4
gene-yeo:4002_CLIP1_rep1.vs.4002_CLIP2_rep2.sorted.nh.bb	ENCFF822EID	file_finalPeaks_bb	eCLIP	4010	Released	ENCODE4