ENCORE eCLIP:626

EIF4B eCLIP in HepG2

Experiment Information (Status: Revoked)

	626	626-control
Exp_UID	626	626
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR410RKN	ENCSR825FZL
ENCODE_alias	gene-yeo:626	gene-yeo:626-control-control
RBP	EIF4B	EIF4B
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB697PTS	ENCAB697PTS
Antibody	A301-767A	A301-767A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Revoked	Revoked
Project	ENCODE3	ENCODE3
ID	297	327

Replicate Information


Rep_UID	626_01	626_02	626_INPUT
Exp UID	626	626	626
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB476SAX	ENCLB855TVL	ENCLB177CHR
ENCODE_alias	gene-yeo:626_01	gene-yeo:626_02	gene-yeo:626_INPUT
Biosample Name	HepG2_091615	HepG2_111915	HepG2_091615
Biosample_ENCODE_Accession	ENCBS621TAB	ENCBS492SDY	ENCBS621TAB
Biosample_ENCODE_Alias	gene-yeo:HepG2_091615	gene-yeo:HepG2_111915	gene-yeo:HepG2_091615
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-09-16	2015-11-19	2015-09-16
Culture_End_Date	2015-10-09	2015-12-10	2015-10-09
Passage	3	4	3

QC Stats

Experiment QC

	626	626-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	626_01	626_02	626_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	626_01	626_02	626_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	501	501	502
i7_barcode	706	706	705

Sequencing Information


Rep_UID	626_01	626_02	626_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information No files are available for eCLIP experiment (Exp_UID=)626

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=626)