UCHL5      eCLIP in K562

Experiment Information (Status: Released)
610610-control
Exp_UID610610
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR349KMGENCSR751CSY
ENCODE_aliasgene-yeo:610gene-yeo:610-control
RBPUCHL5UCHL5
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB421XHIENCAB421XHI
AntibodyA304-099AA304-099A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID338361




Replicate Information
Rep_UID575_INPUT
Exp UID610
Replicate_typecontrol
ENCODE_ACCESSIONENCLB855VXV
ENCODE_aliasgene-yeo:575_INPUT
Biosample NameHepG2_111915
Biosample_ENCODE_AccessionENCBS492SDY
Biosample_ENCODE_Aliasgene-yeo:HepG2_111915
Cell_LineHepG2
Culture_Start_Date2015-11-19
Culture_End_Date2015-12-10
Passage4




QC Stats
Experiment QC
610610-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID575_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID575_INPUT
library_size_selection_methodagarose gel extraction
strand_specificityreverse
inline_barcode_1none
inline_barcode_2none
i5_barcode505
i7_barcode701




Sequencing Information
Rep_UID575_INPUT
seq_read_typepaired-ended
read_length50
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/610.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz610final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
610.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz610final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=610)