ENCORE eCLIP:603

DDX59 eCLIP in HepG2

Experiment Information (Status: Released)

	603	603-control
Exp_UID	603	603
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR214BZA	ENCSR334OMC
ENCODE_alias	gene-yeo:603	gene-yeo:603-control
RBP	DDX59	DDX59
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB112HZS	ENCAB112HZS
Antibody	A303-028A	A303-028A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	246	272

Replicate Information


Rep_UID	603_INPUT	603_01	603_02
Exp UID	603	603	603
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB988JUB	ENCLB794ZGT	ENCLB584YTW
ENCODE_alias	gene-yeo:603_INPUT	gene-yeo:603_01	gene-yeo:603_02
Biosample Name	HepG2_081815	HepG2_081815	HepG2_111915
Biosample_ENCODE_Accession	ENCBS881CIF	ENCBS881CIF	ENCBS492SDY
Biosample_ENCODE_Alias	gene-yeo:HepG2_081815	gene-yeo:HepG2_081815	gene-yeo:HepG2_111915
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-08-18	2015-08-18	2015-11-19
Culture_End_Date	2015-09-10	2015-09-10	2015-12-10
Passage	4	4	4

QC Stats

Experiment QC

	603	603-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	603_INPUT	603_01	603_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	603_INPUT	603_01	603_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A04	A03
inline_barcode_2	none	F05	G07
i5_barcode	503	504	504
i7_barcode	703	704	704

Sequencing Information


Rep_UID	603_INPUT	603_01	603_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/603.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	603	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
603.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	603	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=603)