ENCORE eCLIP:595

DDX55 eCLIP in HepG2

Experiment Information (Status: Released)

	595	595-control
Exp_UID	595	595
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR845VGB	ENCSR454OFD
ENCODE_alias	gene-yeo:595	gene-yeo:595-control
RBP	DDX55	DDX55
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB812HQG	ENCAB812HQG
Antibody	A303-027A	A303-027A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	291	321

Replicate Information


Rep_UID	595_01	595_02	595_INPUT
Exp UID	595	595	595
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB828RSR	ENCLB322HTR	ENCLB588AJF
ENCODE_alias	gene-yeo:595_01	gene-yeo:595_02	gene-yeo:595_INPUT
Biosample Name	HepG2_091615	HepG2_111915	HepG2_091615
Biosample_ENCODE_Accession	ENCBS621TAB	ENCBS492SDY	ENCBS621TAB
Biosample_ENCODE_Alias	gene-yeo:HepG2_091615	gene-yeo:HepG2_111915	gene-yeo:HepG2_091615
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-09-16	2015-11-19	2015-09-16
Culture_End_Date	2015-10-09	2015-12-10	2015-10-09
Passage	3	4	3

QC Stats

Experiment QC

	595	595-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	595_01	595_02	595_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	595_01	595_02	595_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	505	505	506
i7_barcode	706	706	705

Sequencing Information


Rep_UID	595_01	595_02	595_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/595.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	595	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
595.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	595	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=595)