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DDX6
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
589
589-control
Exp_UID
589
589
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR141OIM
ENCSR099KAK
ENCODE_alias
gene-yeo:589
gene-yeo:589-control
RBP
DDX6
DDX6
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB348UON
ENCAB348UON
Antibody
A300-460A
A300-460A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
289
319
Replicate Information
Rep_UID
589_01
589_02
589_INPUT
Exp UID
589
589
589
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB696YVF
ENCLB489ZHO
ENCLB844OXM
ENCODE_alias
gene-yeo:589_01
gene-yeo:589_02
gene-yeo:589_INPUT
Biosample Name
HepG2_091615
HepG2_111915
HepG2_091615
Biosample_ENCODE_Accession
ENCBS621TAB
ENCBS492SDY
ENCBS621TAB
Biosample_ENCODE_Alias
gene-yeo:HepG2_091615
gene-yeo:HepG2_111915
gene-yeo:HepG2_091615
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-09-16
2015-11-19
2015-09-16
Culture_End_Date
2015-10-09
2015-12-10
2015-10-09
Passage
3
4
3
QC Stats
Experiment QC
589
589-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
589_01
589_02
589_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
589_01
589_02
589_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
X1A
X2A
none
inline_barcode_2
X1B
X2B
none
i5_barcode
504
504
503
i7_barcode
704
704
703
Sequencing Information
Rep_UID
589_01
589_02
589_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/589.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
589
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
589.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
589
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=589)
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