ENCORE eCLIP:584

TBRG4 eCLIP in K562

Experiment Information (Status: Released)

	584	584-control
Exp_UID	584	584
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR506OTC	ENCSR512EZA
ENCODE_alias	gene-yeo:584	gene-yeo:584-control
RBP	TBRG4	TBRG4
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB890JXZ	ENCAB890JXZ
Antibody	A301-392A	A301-392A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	288	318

Replicate Information


Rep_UID	584_01	584_02	584_INPUT
Exp UID	584	584	584
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB866OMK	ENCLB188EEL	ENCLB150UIS
ENCODE_alias	gene-yeo:584_01	gene-yeo:584_02	gene-yeo:584_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	584	584-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	584_01	584_02	584_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	584_01	584_02	584_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	504	504	503
i7_barcode	704	704	703

Sequencing Information


Rep_UID	584_01	584_02	584_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/584.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	584	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
584.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	584	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=584)