EFTUD2      eCLIP in K562

Experiment Information (Status: Released)
582582-control
Exp_UID582582
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR844RVXENCSR266UVO
ENCODE_aliasgene-yeo:582gene-yeo:582-control
RBPEFTUD2EFTUD2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB787OVJENCAB787OVJ
AntibodyA300-957AA300-957A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID287317




Replicate Information
Rep_UID582_01582_02582_INPUT
Exp UID582582582
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB955TLTENCLB989JCQENCLB730UAZ
ENCODE_aliasgene-yeo:582_01gene-yeo:582_02gene-yeo:582_INPUT
Biosample NameK562_091615K562_081815K562_091615
Biosample_ENCODE_AccessionENCBS505ILKENCBS175JIHENCBS505ILK
Biosample_ENCODE_Aliasgene-yeo:K562_091615gene-yeo:K562_081815gene-yeo:K562_091615
Cell_LineK562K562K562
Culture_Start_Date2015-09-162015-08-182015-09-16
Culture_End_Date2015-10-142015-09-082015-10-14
Passage454




QC Stats
Experiment QC
582582-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID582_01582_02582_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID582_01582_02582_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1C01A01none
inline_barcode_2D08fixedB06none
i5_barcode504504503
i7_barcode706706705




Sequencing Information
Rep_UID582_01582_02582_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/582.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz582final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
582.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz582final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=582)