DDX6      eCLIP in K562

Experiment Information (Status: Released)
577577-control
Exp_UID577577
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR893EFUENCSR207DWI
ENCODE_aliasgene-yeo:577gene-yeo:577-control
RBPDDX6DDX6
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB348UONENCAB348UON
AntibodyA300-460AA300-460A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID286316




Replicate Information
Rep_UID577_01577_02577_INPUT
Exp UID577577577
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB661HKMENCLB109LMQENCLB101GWM
ENCODE_aliasgene-yeo:577_01gene-yeo:577_02gene-yeo:577_INPUT
Biosample NameK562_091615K562_081815K562_091615
Biosample_ENCODE_AccessionENCBS505ILKENCBS175JIHENCBS505ILK
Biosample_ENCODE_Aliasgene-yeo:K562_091615gene-yeo:K562_081815gene-yeo:K562_091615
Cell_LineK562K562K562
Culture_Start_Date2015-09-162015-08-182015-09-16
Culture_End_Date2015-10-142015-09-082015-10-14
Passage454




QC Stats
Experiment QC
577577-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID577_01577_02577_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID577_01577_02577_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode504504503
i7_barcode703703704




Sequencing Information
Rep_UID577_01577_02577_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/577.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz577final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
577.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz577final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=577)