DROSHA      eCLIP in HepG2

Experiment Information (Status: Released)
575575-control
Exp_UID575575
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR834YLDENCSR785VKF
ENCODE_aliasgene-yeo:575gene-yeo:575-control
RBPDROSHADROSHA
Cell_LineHepG2HepG2
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB936LAQENCAB936LAQ
AntibodyA301-886AA301-886A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID337360




Replicate Information
Rep_UID575_01575_02
Exp UID575575
Replicate_typerep1rep2
ENCODE_ACCESSIONENCLB058IYXENCLB583RAS
ENCODE_aliasgene-yeo:575_01gene-yeo:575_02
Biosample NameHepG2_111915HepG2_091615
Biosample_ENCODE_AccessionENCBS492SDYENCBS621TAB
Biosample_ENCODE_Aliasgene-yeo:HepG2_111915gene-yeo:HepG2_091615
Cell_LineHepG2HepG2
Culture_Start_Date2015-11-192015-09-16
Culture_End_Date2015-12-102015-10-09
Passage43




QC Stats
Experiment QC
575575-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID575_01575_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID575_01575_02
library_size_selection_methodagarose gel extractionagarose gel extraction
strand_specificityreversereverse
inline_barcode_1A01C01
inline_barcode_2B06D08fixed
i5_barcode506506
i7_barcode702702




Sequencing Information
Rep_UID575_01575_02
seq_read_typepaired-endedpaired-ended
read_length5050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/575.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz575final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
575.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz575final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=575)