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NCBP2
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
566
566-control
Exp_UID
566
566
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR484LTQ
ENCSR921SHJ
ENCODE_alias
gene-yeo:566
gene-yeo:566-control
RBP
NCBP2
NCBP2
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB039KCI
ENCAB039KCI
Antibody
A302-553A
A302-553A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
245
271
Replicate Information
Rep_UID
566_INPUT
566_01
566_02
Exp UID
566
566
566
Replicate_type
control
rep1
rep2
ENCODE_ACCESSION
ENCLB485CXA
ENCLB075CXB
ENCLB411ZVM
ENCODE_alias
gene-yeo:566_INPUT
gene-yeo:566_01
gene-yeo:566_02
Biosample Name
K562_070715
K562_070715
K562_081815
Biosample_ENCODE_Accession
ENCBS517UIR
ENCBS517UIR
ENCBS175JIH
Biosample_ENCODE_Alias
gene-yeo:K562_070715
gene-yeo:K562_070715
gene-yeo:K562_081815
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-07-07
2015-07-07
2015-08-18
Culture_End_Date
2015-08-04
2015-08-04
2015-09-08
Passage
5
5
5
QC Stats
Experiment QC
566
566-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
566_INPUT
566_01
566_02
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
566_INPUT
566_01
566_02
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
none
A03
A04
inline_barcode_2
none
G07
F05
i5_barcode
506
505
505
i7_barcode
703
704
704
Sequencing Information
Rep_UID
566_INPUT
566_01
566_02
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/566.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
566
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
566.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
566
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=566)
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