NOLC1      eCLIP in HepG2

Experiment Information (Status: Released)
553553-control
Exp_UID553553
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR194HZUENCSR278BZH
ENCODE_aliasgene-yeo:553gene-yeo:553-control
RBPNOLC1NOLC1
Cell_LineHepG2HepG2
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB287BXFENCAB287BXF
AntibodyA302-184AA302-184A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID241267




Replicate Information
Rep_UID553_INPUT553_01553_02
Exp UID553553553
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB971TQMENCLB788KXRENCLB081AAY
ENCODE_aliasgene-yeo:553_INPUTgene-yeo:553_01gene-yeo:553_02
Biosample NameHepG2_061215HepG2_061215HepG2_081815
Biosample_ENCODE_AccessionENCBS308ZPAENCBS308ZPAENCBS881CIF
Biosample_ENCODE_Aliasgene-yeo:HepG2_061215gene-yeo:HepG2_061215gene-yeo:HepG2_081815
Cell_LineHepG2HepG2HepG2
Culture_Start_Date2015-06-122015-06-122015-08-18
Culture_End_Date2015-06-302015-06-302015-09-10
Passage334




QC Stats
Experiment QC
553553-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID553_INPUT553_01553_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID553_INPUT553_01553_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA04A03
inline_barcode_2noneF05G07
i5_barcode506505505
i7_barcode705706706




Sequencing Information
Rep_UID553_INPUT553_01553_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/553.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz553final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
553.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz553final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=553)