ENCORE eCLIP:552

RBM15 eCLIP in HepG2

Experiment Information (Status: Released)

	552	552-control
Exp_UID	552	552
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR754NDA	ENCSR317PWQ
ENCODE_alias	gene-yeo:552	gene-yeo:552-control
RBP	RBM15	RBM15
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB626AJI	ENCAB626AJI
Antibody	A300-821A	A300-821A
Lot_num	2	2
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	240	266

Replicate Information


Rep_UID	552_INPUT	552_01	552_02
Exp UID	552	552	552
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB921SNF	ENCLB626SKY	ENCLB608QWG
ENCODE_alias	gene-yeo:552_INPUT	gene-yeo:552_01	gene-yeo:552_02
Biosample Name	HepG2_061215	HepG2_061215	HepG2_081815
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS308ZPA	ENCBS881CIF
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_061215	gene-yeo:HepG2_081815
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-06-12	2015-08-18
Culture_End_Date	2015-06-30	2015-06-30	2015-09-10
Passage	3	3	4

QC Stats

Experiment QC

	552	552-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	552_INPUT	552_01	552_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	552_INPUT	552_01	552_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A04	A03
inline_barcode_2	none	F05	G07
i5_barcode	505	506	506
i7_barcode	705	706	706

Sequencing Information


Rep_UID	552_INPUT	552_01	552_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/552.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	552	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
552.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	552	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=552)