ENCORE eCLIP:550

DDX55 eCLIP in K562

Experiment Information (Status: Released)

	550	550-control
Exp_UID	550	550
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR923NKN	ENCSR180EJY
ENCODE_alias	gene-yeo:550	gene-yeo:550-control
RBP	DDX55	DDX55
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB812HQG	ENCAB812HQG
Antibody	A303-027A	A303-027A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	282	312

Replicate Information


Rep_UID	550_01	550_02	550_INPUT
Exp UID	550	550	550
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB310FRS	ENCLB734SRL	ENCLB864BOZ
ENCODE_alias	gene-yeo:550_01	gene-yeo:550_02	gene-yeo:550_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	550	550-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	550_01	550_02	550_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	550_01	550_02	550_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	506	506	505
i7_barcode	704	704	703

Sequencing Information


Rep_UID	550_01	550_02	550_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/550.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	550	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
550.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	550	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=550)