ENCORE eCLIP:545

EIF3H eCLIP in HepG2

Experiment Information (Status: Released)

	545	545-control
Exp_UID	545	545
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR916XIV	ENCSR756NPZ
ENCODE_alias	gene-yeo:545	gene-yeo:545-control
RBP	EIF3H	EIF3H
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB957ITF	ENCAB957ITF
Antibody	A301-754A	A301-754A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	280	310

Replicate Information


Rep_UID	545_01	545_02	545_INPUT
Exp UID	545	545	545
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB911RVR	ENCLB398WTG	ENCLB550RSV
ENCODE_alias	gene-yeo:545_01	gene-yeo:545_02	gene-yeo:545_INPUT
Biosample Name	HepG2_061215	HepG2_081815	HepG2_061215
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS881CIF	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_081815	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-08-18	2015-06-12
Culture_End_Date	2015-06-30	2015-09-10	2015-06-30
Passage	3	4	3

QC Stats

Experiment QC

	545	545-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	545_01	545_02	545_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	545_01	545_02	545_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	C01	A01	none
inline_barcode_2	D08fixed	B06	none
i5_barcode	506	506	505
i7_barcode	706	706	705

Sequencing Information


Rep_UID	545_01	545_02	545_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/545.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	545	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
545.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	545	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=545)