ENCORE eCLIP:544

DKC1 eCLIP in HepG2

Experiment Information (Status: Released)

	544	544-control
Exp_UID	544	544
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR301TFY	ENCSR197LHH
ENCODE_alias	gene-yeo:544	gene-yeo:544-control
RBP	DKC1	DKC1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB174DOV	ENCAB174DOV
Antibody	GTX109000	GTX109000
Lot_num	40583	40583
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	238	264

Replicate Information


Rep_UID	544_INPUT	544_01	544_02
Exp UID	544	544	544
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB381YSU	ENCLB199TOE	ENCLB380NKX
ENCODE_alias	gene-yeo:544_INPUT	gene-yeo:544_01	gene-yeo:544_02
Biosample Name	HepG2_061215	HepG2_061215	HepG2_081815
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS308ZPA	ENCBS881CIF
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_061215	gene-yeo:HepG2_081815
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-06-12	2015-08-18
Culture_End_Date	2015-06-30	2015-06-30	2015-09-10
Passage	3	3	4

QC Stats

Experiment QC

	544	544-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	544_INPUT	544_01	544_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	544_INPUT	544_01	544_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A01	C01
inline_barcode_2	none	B06	D08fixed
i5_barcode	503	504	504
i7_barcode	706	705	705

Sequencing Information


Rep_UID	544_INPUT	544_01	544_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/544.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	544	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
544.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	544	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=544)