ENCORE eCLIP:540

RPS3 eCLIP in HepG2

Experiment Information (Status: Released)

	540	540-control
Exp_UID	540	540
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR766FAC	ENCSR745BIL
ENCODE_alias	gene-yeo:540	gene-yeo:540-control
RBP	RPS3	RPS3
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB855QRN	ENCAB855QRN
Antibody	A303-840A	A303-840A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	236	262

Replicate Information


Rep_UID	540_INPUT	540_01	540_02
Exp UID	540	540	540
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB772QSV	ENCLB639DFA	ENCLB636HXE
ENCODE_alias	gene-yeo:540_INPUT	gene-yeo:540_01	gene-yeo:540_02
Biosample Name	HepG2_040915	HepG2_040915	HepG2_061215
Biosample_ENCODE_Accession	ENCBS362ASG	ENCBS362ASG	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_040915	gene-yeo:HepG2_040915	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-04-09	2015-04-09	2015-06-12
Culture_End_Date	2015-05-08	2015-05-08	2015-06-30
Passage	5	5	3

QC Stats

Experiment QC

	540	540-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	540_INPUT	540_01	540_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	540_INPUT	540_01	540_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A03	A04
inline_barcode_2	none	G07	F05
i5_barcode	501	502	502
i7_barcode	703	704	704

Sequencing Information


Rep_UID	540_INPUT	540_01	540_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/540.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	540	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
540.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	540	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=540)