ENCORE eCLIP:539

NOL12 eCLIP in HepG2

Experiment Information (Status: Released)

	539	539-control
Exp_UID	539	539
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR820DQJ	ENCSR709ABG
ENCODE_alias	gene-yeo:539	gene-yeo:539-control
RBP	NOL12	NOL12
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB727RRN	ENCAB727RRN
Antibody	A302-733A	A302-733A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	235	261

Replicate Information


Rep_UID	539_INPUT	539_01	539_02
Exp UID	539	539	539
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB519BOO	ENCLB947OLN	ENCLB314QQN
ENCODE_alias	gene-yeo:539_INPUT	gene-yeo:539_01	gene-yeo:539_02
Biosample Name	HepG2_040915	HepG2_040915	HepG2_061215
Biosample_ENCODE_Accession	ENCBS362ASG	ENCBS362ASG	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_040915	gene-yeo:HepG2_040915	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-04-09	2015-04-09	2015-06-12
Culture_End_Date	2015-05-08	2015-05-08	2015-06-30
Passage	5	5	3

QC Stats

Experiment QC

	539	539-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	539_INPUT	539_01	539_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	539_INPUT	539_01	539_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A04	A03
inline_barcode_2	none	F05	G07
i5_barcode	503	504	504
i7_barcode	703	704	704

Sequencing Information


Rep_UID	539_INPUT	539_01	539_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/539.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	539	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
539.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	539	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=539)