RPS3      eCLIP in K562

Experiment Information (Status: Released)
530530-control
Exp_UID530530
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR120EARENCSR494JFR
ENCODE_aliasgene-yeo:530gene-yeo:530-control
RBPRPS3RPS3
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB855QRNENCAB855QRN
AntibodyA303-840AA303-840A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID233259




Replicate Information
Rep_UID530_INPUT530_01530_02
Exp UID530530530
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB815RAPENCLB606LJCENCLB751JDE
ENCODE_aliasgene-yeo:530_INPUTgene-yeo:530_01gene-yeo:530_02
Biosample NameK562_061215K562_061215K562_070715
Biosample_ENCODE_AccessionENCBS318IMKENCBS318IMKENCBS517UIR
Biosample_ENCODE_Aliasgene-yeo:K562_061215gene-yeo:K562_061215gene-yeo:K562_070715
Cell_LineK562K562K562
Culture_Start_Date2015-06-122015-06-122015-07-07
Culture_End_Date2015-06-302015-06-302015-08-04
Passage445




QC Stats
Experiment QC
530530-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID530_INPUT530_01530_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID530_INPUT530_01530_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA01C01
inline_barcode_2noneB06D08fixed
i5_barcode501502502
i7_barcode705706706




Sequencing Information
Rep_UID530_INPUT530_01530_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/530.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz530final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
530.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz530final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=530)