HLTF      eCLIP in K562

Experiment Information (Status: Released)
522522-control
Exp_UID522522
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR589YHMENCSR502NKG
ENCODE_aliasgene-yeo:522gene-yeo:522-control
RBPHLTFHLTF
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB902OZZENCAB902OZZ
AntibodyA300-230AA300-230A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID277307




Replicate Information
Rep_UID522_01522_02522_INPUT
Exp UID522522522
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB173PCGENCLB416FXCENCLB283UYZ
ENCODE_aliasgene-yeo:522_01gene-yeo:522_02gene-yeo:522_INPUT
Biosample NameK562_070715K562_061215K562_070715
Biosample_ENCODE_AccessionENCBS517UIRENCBS318IMKENCBS517UIR
Biosample_ENCODE_Aliasgene-yeo:K562_070715gene-yeo:K562_061215gene-yeo:K562_070715
Cell_LineK562K562K562
Culture_Start_Date2015-07-072015-06-122015-07-07
Culture_End_Date2015-08-042015-06-302015-08-04
Passage545




QC Stats
Experiment QC
522522-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID522_01522_02522_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID522_01522_02522_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode503503504
i7_barcode706706705




Sequencing Information
Rep_UID522_01522_02522_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/522.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz522final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
522.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz522final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=522)