ENCORE eCLIP:516

NOLC1 eCLIP in K562

Experiment Information (Status: Released)

	516	516-control
Exp_UID	516	516
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR001VAC	ENCSR009CIV
ENCODE_alias	gene-yeo:516	gene-yeo:516-control
RBP	NOLC1	NOLC1
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB287BXF	ENCAB287BXF
Antibody	A302-184A	A302-184A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	232	258

Replicate Information


Rep_UID	516_INPUT	516_01	516_02
Exp UID	516	516	516
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB251JHI	ENCLB917HUC	ENCLB543AYO
ENCODE_alias	gene-yeo:516_INPUT	gene-yeo:516_01	gene-yeo:516_02
Biosample Name	K562_061215	K562_061215	K562_070715
Biosample_ENCODE_Accession	ENCBS318IMK	ENCBS318IMK	ENCBS517UIR
Biosample_ENCODE_Alias	gene-yeo:K562_061215	gene-yeo:K562_061215	gene-yeo:K562_070715
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-06-12	2015-06-12	2015-07-07
Culture_End_Date	2015-06-30	2015-06-30	2015-08-04
Passage	4	4	5

QC Stats

Experiment QC

	516	516-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	516_INPUT	516_01	516_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	516_INPUT	516_01	516_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A04	A03
inline_barcode_2	none	F05	G07
i5_barcode	501	502	502
i7_barcode	705	706	706

Sequencing Information


Rep_UID	516_INPUT	516_01	516_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/516.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	516	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
516.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	516	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=516)