SF3B4      eCLIP in K562

Experiment Information (Status: Released)
507507-control
Exp_UID507507
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR267OLVENCSR305KNE
ENCODE_aliasgene-yeo:507gene-yeo:507-control
RBPSF3B4SF3B4
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB647CFUENCAB647CFU
AntibodyA303-950AA303-950A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID229255




Replicate Information
Rep_UID507_INPUT507_01507_02
Exp UID507507507
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB305HZKENCLB199EGBENCLB513QIG
ENCODE_aliasgene-yeo:507_INPUTgene-yeo:507_01gene-yeo:507_02
Biosample NameK562_070715K562_070715K562_081815
Biosample_ENCODE_AccessionENCBS517UIRENCBS517UIRENCBS175JIH
Biosample_ENCODE_Aliasgene-yeo:K562_070715gene-yeo:K562_070715gene-yeo:K562_081815
Cell_LineK562K562K562
Culture_Start_Date2015-07-072015-07-072015-08-18
Culture_End_Date2015-08-042015-08-042015-09-08
Passage555




QC Stats
Experiment QC
507507-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID507_INPUT507_01507_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID507_INPUT507_01507_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA01C01
inline_barcode_2noneB06D08fixed
i5_barcode506505505
i7_barcode705706706




Sequencing Information
Rep_UID507_INPUT507_01507_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/507.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz507final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
507.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz507final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=507)