EXOSC5      eCLIP in K562

Experiment Information (Status: Released)
491491-control
Exp_UID491491
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR013CTQENCSR308RMD
ENCODE_aliasgene-yeo:491gene-yeo:491-control
RBPEXOSC5EXOSC5
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB480FQKENCAB480FQK
AntibodyRN100PWRN100PW
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID302332




Replicate Information
Rep_UID491_01491_02491_INPUT
Exp UID491491491
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB049IVIENCLB897LSXENCLB045QID
ENCODE_aliasgene-yeo:491_01gene-yeo:491_02gene-yeo:491_INPUT
Biosample NameK562_061215K562_081815K562_061215
Biosample_ENCODE_AccessionENCBS318IMKENCBS175JIHENCBS318IMK
Biosample_ENCODE_Aliasgene-yeo:K562_061215gene-yeo:K562_081815gene-yeo:K562_061215
Cell_LineK562K562K562
Culture_Start_Date2015-06-122015-08-182015-06-12
Culture_End_Date2015-06-302015-09-082015-06-30
Passage454




QC Stats
Experiment QC
491491-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID491_01491_02491_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID491_01491_02491_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode501501502
i7_barcode702702701




Sequencing Information
Rep_UID491_01491_02491_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/491.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz491final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
491.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz491final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=491)