XRCC6      eCLIP in K562

Experiment Information (Status: Released)
480480-control
Exp_UID480480
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR258QKOENCSR687HHB
ENCODE_aliasgene-yeo:480gene-yeo:480-control
RBPXRCC6XRCC6
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB462RZDENCAB462RZD
AntibodyA302-624AA302-624A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID186212




Replicate Information
Rep_UID480_01480_02480_INPUT
Exp UID480480480
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB472AWBENCLB874IKEENCLB922NVL
ENCODE_aliasgene-yeo:480_01gene-yeo:480_02gene-yeo:480_INPUT
Biosample NameK562_061215K562_081815K562_061215
Biosample_ENCODE_AccessionENCBS318IMKENCBS175JIHENCBS318IMK
Biosample_ENCODE_Aliasgene-yeo:K562_061215gene-yeo:K562_081815gene-yeo:K562_061215
Cell_LineK562K562K562
Culture_Start_Date2015-06-122015-08-182015-06-12
Culture_End_Date2015-06-302015-09-082015-06-30
Passage454




QC Stats
Experiment QC
480480-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID480_01480_02480_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID480_01480_02480_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502501
i7_barcode702702701




Sequencing Information
Rep_UID480_01480_02480_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/480.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz480final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
480.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz480final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=480)