ENCORE eCLIP:478

QKI eCLIP in HepG2

Experiment Information (Status: Released)

	478	478-control
Exp_UID	478	478
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR570WLM	ENCSR130TOJ
ENCODE_alias	gene-yeo:478	gene-yeo:478-control
RBP	QKI	QKI
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB494QSS	ENCAB494QSS
Antibody	A300-183A	A300-183A
Lot_num	2	2
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	185	211

Replicate Information


Rep_UID	478_01	478_02	478_INPUT
Exp UID	478	478	478
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB238JYQ	ENCLB436FYS	ENCLB092SNT
ENCODE_alias	gene-yeo:478_01	gene-yeo:478_02	gene-yeo:478_INPUT
Biosample Name	HepG2_040915	HepG2_061215	HepG2_040915
Biosample_ENCODE_Accession	ENCBS362ASG	ENCBS308ZPA	ENCBS362ASG
Biosample_ENCODE_Alias	gene-yeo:HepG2_040915	gene-yeo:HepG2_061215	gene-yeo:HepG2_040915
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-04-09	2015-06-12	2015-04-09
Culture_End_Date	2015-05-08	2015-06-30	2015-05-08
Passage	5	3	5

QC Stats

Experiment QC

	478	478-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	478_01	478_02	478_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	478_01	478_02	478_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	502	502	501
i7_barcode	705	705	706

Sequencing Information


Rep_UID	478_01	478_02	478_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/478.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	478	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
478.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	478	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=478)