MTPAP      eCLIP in K562

Experiment Information (Status: Released)
470470-control
Exp_UID470470
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR200DKEENCSR927XDB
ENCODE_aliasgene-yeo:470gene-yeo:470-control
RBPMTPAPMTPAP
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB235DTMENCAB235DTM
AntibodyA303-904AA303-904A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID227253




Replicate Information
Rep_UID470_INPUT470_01470_02
Exp UID470470470
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB384BYRENCLB241IUVENCLB333CPS
ENCODE_aliasgene-yeo:470_INPUTgene-yeo:470_01gene-yeo:470_02
Biosample NameK562_070715K562_070715K562_061215
Biosample_ENCODE_AccessionENCBS517UIRENCBS517UIRENCBS318IMK
Biosample_ENCODE_Aliasgene-yeo:K562_070715gene-yeo:K562_070715gene-yeo:K562_061215
Cell_LineK562K562K562
Culture_Start_Date2015-07-072015-07-072015-06-12
Culture_End_Date2015-08-042015-08-042015-06-30
Passage554




QC Stats
Experiment QC
470470-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID470_INPUT470_01470_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID470_INPUT470_01470_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA01C01
inline_barcode_2noneB06D08fixed
i5_barcode503503503
i7_barcode705702702




Sequencing Information
Rep_UID470_INPUT470_01470_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/470.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz470final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
470.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz470final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=470)