FTO      eCLIP in K562

Experiment Information (Status: Released)
464464-control
Exp_UID464464
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR989SMCENCSR575DKE
ENCODE_aliasgene-yeo:464gene-yeo:464-control
RBPFTOFTO
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB377UYDENCAB377UYD
AntibodyRN121PWRN121PW
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID193219




Replicate Information
Rep_UID464_01464_02464_INPUT
Exp UID464464464
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB550OFFENCLB152QMPENCLB084BHO
ENCODE_aliasgene-yeo:464_01gene-yeo:464_02gene-yeo:464_INPUT
Biosample NameK562_070715K562_061215K562_070715
Biosample_ENCODE_AccessionENCBS517UIRENCBS318IMKENCBS517UIR
Biosample_ENCODE_Aliasgene-yeo:K562_070715gene-yeo:K562_061215gene-yeo:K562_070715
Cell_LineK562K562K562
Culture_Start_Date2015-07-072015-06-122015-07-07
Culture_End_Date2015-08-042015-06-302015-08-04
Passage545




QC Stats
Experiment QC
464464-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID464_01464_02464_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID464_01464_02464_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1C01A01none
inline_barcode_2D08fixedB06none
i5_barcode506506505
i7_barcode704704703




Sequencing Information
Rep_UID464_01464_02464_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/464.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz464final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
464.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz464final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=464)