ENCORE eCLIP:460

FASTKD2 eCLIP in K562

Experiment Information (Status: Released)

	460	460-control
Exp_UID	460	460
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR887FHF	ENCSR119AFY
ENCODE_alias	gene-yeo:460	gene-yeo:460-control
RBP	FASTKD2	FASTKD2
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB541LFT	ENCAB541LFT
Antibody	A303-788A	A303-788A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	225	251

Replicate Information


Rep_UID	460_INPUT	460_01	460_02
Exp UID	460	460	460
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB470YIY	ENCLB491IVH	ENCLB050DGH
ENCODE_alias	gene-yeo:460_INPUT	gene-yeo:460_01	gene-yeo:460_02
Biosample Name	K562_061215	K562_061215	K562_070715
Biosample_ENCODE_Accession	ENCBS318IMK	ENCBS318IMK	ENCBS517UIR
Biosample_ENCODE_Alias	gene-yeo:K562_061215	gene-yeo:K562_061215	gene-yeo:K562_070715
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-06-12	2015-06-12	2015-07-07
Culture_End_Date	2015-06-30	2015-06-30	2015-08-04
Passage	4	4	5

QC Stats

Experiment QC

	460	460-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	460_INPUT	460_01	460_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	460_INPUT	460_01	460_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A01	C01
inline_barcode_2	none	B06	D08fixed
i5_barcode	504	503	503
i7_barcode	702	701	701

Sequencing Information


Rep_UID	460_INPUT	460_01	460_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/460.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	460	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
460.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	460	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=460)