ENCORE eCLIP:450

GPKOW eCLIP in K562

Experiment Information (Status: Released)

	450	450-control
Exp_UID	450	450
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR647CLF	ENCSR393STP
ENCODE_alias	gene-yeo:450	gene-yeo:450-control
RBP	GPKOW	GPKOW
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB445RKH	ENCAB445RKH
Antibody	GTX117716	GTX117716
Lot_num	40289	40289
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	181	207

Replicate Information


Rep_UID	450_01	450_02	450_INPUT
Exp UID	450	450	450
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB850EER	ENCLB288CKF	ENCLB105SXR
ENCODE_alias	gene-yeo:450_01	gene-yeo:450_02	gene-yeo:450_INPUT
Biosample Name	K562_070715	K562_061215	K562_070715
Biosample_ENCODE_Accession	ENCBS517UIR	ENCBS318IMK	ENCBS517UIR
Biosample_ENCODE_Alias	gene-yeo:K562_070715	gene-yeo:K562_061215	gene-yeo:K562_070715
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-07-07	2015-06-12	2015-07-07
Culture_End_Date	2015-08-04	2015-06-30	2015-08-04
Passage	5	4	5

QC Stats

Experiment QC

	450	450-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	450_01	450_02	450_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	450_01	450_02	450_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	502	502	501
i7_barcode	704	704	703

Sequencing Information


Rep_UID	450_01	450_02	450_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/450.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	450	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
450.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	450	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=450)