ENCORE eCLIP:447

TROVE2 eCLIP in K562

Experiment Information (Status: Released)

	447	447-control
Exp_UID	447	447
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR539ZTS	ENCSR687GJH
ENCODE_alias	gene-yeo:447	gene-yeo:447-control
RBP	TROVE2	TROVE2
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB703EAU	ENCAB703EAU
Antibody	A303-692A	A303-692A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	180	206

Replicate Information


Rep_UID	447_01	447_02	447_INPUT
Exp UID	447	447	447
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB996FJM	ENCLB061NQW	ENCLB189OUL
ENCODE_alias	gene-yeo:447_01	gene-yeo:447_02	gene-yeo:447_INPUT
Biosample Name	K562_061215	K562_022315	K562_061215
Biosample_ENCODE_Accession	ENCBS318IMK	ENCBS831COV	ENCBS318IMK
Biosample_ENCODE_Alias	gene-yeo:K562_061215	gene-yeo:K562_022315	gene-yeo:K562_061215
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-06-12	2015-02-23	2015-06-12
Culture_End_Date	2015-06-30	2015-03-20	2015-06-30
Passage	4	6	4

QC Stats

Experiment QC

	447	447-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	447_01	447_02	447_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	447_01	447_02	447_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	502	502	501
i7_barcode	703	703	704

Sequencing Information


Rep_UID	447_01	447_02	447_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/447.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	447	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
447.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	447	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=447)