PUM2      eCLIP in K562

Experiment Information (Status: Released)
441441-control
Exp_UID441441
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR661ICQENCSR439GXW
ENCODE_aliasgene-yeo:441gene-yeo:441-control
RBPPUM2PUM2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB818JWNENCAB818JWN
AntibodyA300-202AA300-202A
Lot_num22
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID177203




Replicate Information
Rep_UID441_01441_02441_INPUT
Exp UID441441441
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB175BHTENCLB650JTPENCLB809FVC
ENCODE_aliasgene-yeo:441_01gene-yeo:441_02gene-yeo:441_INPUT
Biosample NameK562_061215K562_051215K562_061215
Biosample_ENCODE_AccessionENCBS318IMKENCBS489LOCENCBS318IMK
Biosample_ENCODE_Aliasgene-yeo:K562_061215gene-yeo:K562_051215gene-yeo:K562_061215
Cell_LineK562K562K562
Culture_Start_Date2015-06-122015-05-122015-06-12
Culture_End_Date2015-06-302015-06-112015-06-30
Passage444




QC Stats
Experiment QC
441441-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID441_01441_02441_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID441_01441_02441_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode501501502
i7_barcode703703704




Sequencing Information
Rep_UID441_01441_02441_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/441.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz441final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
441.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz441final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=441)