EWSR1      eCLIP in K562

Experiment Information (Status: Released)
440440-control
Exp_UID440440
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR887LPKENCSR067UKU
ENCODE_aliasgene-yeo:440gene-yeo:440-control
RBPEWSR1EWSR1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB366VTKENCAB366VTK
AntibodyA300-417AA300-417A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID176202




Replicate Information
Rep_UID440_01440_02440_INPUT
Exp UID440440440
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB689GWRENCLB959KMSENCLB512BFT
ENCODE_aliasgene-yeo:440_01gene-yeo:440_02gene-yeo:440_INPUT
Biosample NameK562_051215K562_061215K562_051215
Biosample_ENCODE_AccessionENCBS489LOCENCBS318IMKENCBS489LOC
Biosample_ENCODE_Aliasgene-yeo:K562_051215gene-yeo:K562_061215gene-yeo:K562_051215
Cell_LineK562K562K562
Culture_Start_Date2015-05-122015-06-122015-05-12
Culture_End_Date2015-06-112015-06-302015-06-11
Passage444




QC Stats
Experiment QC
440440-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID440_01440_02440_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID440_01440_02440_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode505505506
i7_barcode702702701




Sequencing Information
Rep_UID440_01440_02440_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/440.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz440final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
440.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz440final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=440)