ENCORE eCLIP:437

SFPQ eCLIP in HepG2

Experiment Information (Status: Released)

	437	437-control
Exp_UID	437	437
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR965DLL	ENCSR506EIW
ENCODE_alias	gene-yeo:437	gene-yeo:437-control
RBP	SFPQ	SFPQ
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB692IKS	ENCAB692IKS
Antibody	A301-321A	A301-321A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	224	250

Replicate Information


Rep_UID	437_INPUT	437_01	437_02
Exp UID	437	437	437
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB874LFX	ENCLB487MBF	ENCLB720JBU
ENCODE_alias	gene-yeo:437_INPUT	gene-yeo:437_01	gene-yeo:437_02
Biosample Name	HepG2_040915	HepG2_040915	HepG2_061215
Biosample_ENCODE_Accession	ENCBS362ASG	ENCBS362ASG	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_040915	gene-yeo:HepG2_040915	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-04-09	2015-04-09	2015-06-12
Culture_End_Date	2015-05-08	2015-05-08	2015-06-30
Passage	5	5	3

QC Stats

Experiment QC

	437	437-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	437_INPUT	437_01	437_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	437_INPUT	437_01	437_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	C01	A01
inline_barcode_2	none	D08fixed	B06
i5_barcode	506	505	505
i7_barcode	703	704	704

Sequencing Information


Rep_UID	437_INPUT	437_01	437_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/437.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	437	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
437.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	437	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=437)