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AKAP8L
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
425
425-control
Exp_UID
425
425
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR206RXT
ENCSR550SGC
ENCODE_alias
gene-yeo:425
gene-yeo:425-control
RBP
AKAP8L
AKAP8L
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB936VHC
ENCAB936VHC
Antibody
GTX115831
GTX115831
Lot_num
40296
40296
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
223
249
Replicate Information
Rep_UID
425_INPUT
425_01
425_02
Exp UID
425
425
425
Replicate_type
control
rep1
rep2
ENCODE_ACCESSION
ENCLB907IEL
ENCLB952UUA
ENCLB288WMN
ENCODE_alias
gene-yeo:425_INPUT
gene-yeo:425_01
gene-yeo:425_02
Biosample Name
K562_061215
K562_061215
K562_040915
Biosample_ENCODE_Accession
ENCBS318IMK
ENCBS318IMK
ENCBS931MQO
Biosample_ENCODE_Alias
gene-yeo:K562_061215
gene-yeo:K562_061215
gene-yeo:K562_040915
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-06-12
2015-06-12
2015-04-09
Culture_End_Date
2015-06-30
2015-06-30
2015-05-08
Passage
4
4
5
QC Stats
Experiment QC
425
425-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
425_INPUT
425_01
425_02
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
425_INPUT
425_01
425_02
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
none
A01
C01
inline_barcode_2
none
B06
D08fixed
i5_barcode
505
505
505
i7_barcode
704
703
703
Sequencing Information
Rep_UID
425_INPUT
425_01
425_02
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/425.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
425
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
425.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
425
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=425)
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