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SF3A3
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
393
393-control
Exp_UID
393
393
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR331MIC
ENCSR859PUB
ENCODE_alias
gene-yeo:393
gene-yeo:393-control
RBP
SF3A3
SF3A3
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB757ZZH
ENCAB757ZZH
Antibody
A302-506A
A302-506A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
152
167
Replicate Information
Rep_UID
393_01
393_02
393_INPUT
Exp UID
393
393
393
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB074UAQ
ENCLB772PSD
ENCLB390TXJ
ENCODE_alias
gene-yeo:393_01
gene-yeo:393_02
gene-yeo:393_INPUT
Biosample Name
HepG2_040915
HepG2_061215
HepG2_040915
Biosample_ENCODE_Accession
ENCBS362ASG
ENCBS308ZPA
ENCBS362ASG
Biosample_ENCODE_Alias
gene-yeo:HepG2_040915
gene-yeo:HepG2_061215
gene-yeo:HepG2_040915
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-04-09
2015-06-12
2015-04-09
Culture_End_Date
2015-05-08
2015-06-30
2015-05-08
Passage
5
3
5
QC Stats
Experiment QC
393
393-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
393_01
393_02
393_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
393_01
393_02
393_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A04
A03
none
inline_barcode_2
F05
G07
none
i5_barcode
504
504
504
i7_barcode
705
705
706
Sequencing Information
Rep_UID
393_01
393_02
393_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/393.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
393
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
393.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
393
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=393)
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