SRSF7      eCLIP in K562

Experiment Information (Status: Released)
376376-control
Exp_UID376376
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR468FSWENCSR145PHJ
ENCODE_aliasgene-yeo:376gene-yeo:376-control
RBPSRSF7SRSF7
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB910DVSENCAB910DVS
AntibodyRN079PWRN079PW
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID221247




Replicate Information
Rep_UID376_INPUT376_01376_02
Exp UID376376376
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB179WTXENCLB401OELENCLB090ZQT
ENCODE_aliasgene-yeo:376_INPUTgene-yeo:376_01gene-yeo:376_02
Biosample NameK562_040915K562_040915K562_051215
Biosample_ENCODE_AccessionENCBS931MQOENCBS931MQOENCBS489LOC
Biosample_ENCODE_Aliasgene-yeo:K562_040915gene-yeo:K562_040915gene-yeo:K562_051215
Cell_LineK562K562K562
Culture_Start_Date2015-04-092015-04-092015-05-12
Culture_End_Date2015-05-082015-05-082015-06-11
Passage554




QC Stats
Experiment QC
376376-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID376_INPUT376_01376_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID376_INPUT376_01376_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA01C01
inline_barcode_2noneB06D08fixed
i5_barcode501502502
i7_barcode701702702




Sequencing Information
Rep_UID376_INPUT376_01376_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/376.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz376final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
376.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz376final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=376)