GNL3      eCLIP in K562

Experiment Information (Status: Released)
358358-control
Exp_UID358358
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR301UQMENCSR977GTT
ENCODE_aliasgene-yeo:358gene-yeo:358-control
RBPGNL3GNL3
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB664GBPENCAB664GBP
AntibodyA300-599AA300-599A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID145160




Replicate Information
Rep_UID358_01358_02358_INPUT
Exp UID358358358
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB024FXKENCLB556NWJENCLB379DOA
ENCODE_aliasgene-yeo:358_01gene-yeo:358_02gene-yeo:358_INPUT
Biosample NameK562_022315K562_040915K562_022315
Biosample_ENCODE_AccessionENCBS831COVENCBS931MQOENCBS831COV
Biosample_ENCODE_Aliasgene-yeo:K562_022315gene-yeo:K562_040915gene-yeo:K562_022315
Cell_LineK562K562K562
Culture_Start_Date2015-02-232015-04-092015-02-23
Culture_End_Date2015-03-202015-05-082015-03-20
Passage656




QC Stats
Experiment QC
358358-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID358_01358_02358_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID358_01358_02358_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode506506506
i7_barcode704704703




Sequencing Information
Rep_UID358_01358_02358_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/358.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz358final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
358.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz358final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=358)