NPM1      eCLIP in K562

Experiment Information (Status: Released)
354354-control
Exp_UID354354
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR867DSZENCSR468ZQA
ENCODE_aliasgene-yeo:354gene-yeo:354-control
RBPNPM1NPM1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB881HTOENCAB881HTO
AntibodyA302-402AA302-402A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID144159




Replicate Information
Rep_UID354_01354_02354_INPUT
Exp UID354354354
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB116EMBENCLB627IFQENCLB395CQN
ENCODE_aliasgene-yeo:354_01gene-yeo:354_02gene-yeo:354_INPUT
Biosample NameK562_022315K562_040915K562_022315
Biosample_ENCODE_AccessionENCBS831COVENCBS931MQOENCBS831COV
Biosample_ENCODE_Aliasgene-yeo:K562_022315gene-yeo:K562_040915gene-yeo:K562_022315
Cell_LineK562K562K562
Culture_Start_Date2015-02-232015-04-092015-02-23
Culture_End_Date2015-03-202015-05-082015-03-20
Passage656




QC Stats
Experiment QC
354354-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID354_01354_02354_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID354_01354_02354_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502502
i7_barcode706706705




Sequencing Information
Rep_UID354_01354_02354_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/354.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz354final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
354.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz354final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=354)