ENCORE eCLIP:350

DDX3X eCLIP in K562

Experiment Information (Status: Released)

	350	350-control
Exp_UID	350	350
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR930BZL	ENCSR028CRL
ENCODE_alias	gene-yeo:350	gene-yeo:350-control
RBP	DDX3X	DDX3X
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB173JTT	ENCAB173JTT
Antibody	A300-474A	A300-474A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	141	156

Replicate Information


Rep_UID	350_01	350_02	350_INPUT
Exp UID	350	350	350
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB780MPM	ENCLB657WFG	ENCLB515OJU
ENCODE_alias	gene-yeo:350_01	gene-yeo:350_02	gene-yeo:350_INPUT
Biosample Name	K562_022315	K562_040915	K562_022315
Biosample_ENCODE_Accession	ENCBS831COV	ENCBS931MQO	ENCBS831COV
Biosample_ENCODE_Alias	gene-yeo:K562_022315	gene-yeo:K562_040915	gene-yeo:K562_022315
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-02-23	2015-04-09	2015-02-23
Culture_End_Date	2015-03-20	2015-05-08	2015-03-20
Passage	6	5	6

QC Stats

Experiment QC

	350	350-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	350_01	350_02	350_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	350_01	350_02	350_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	A04	none
inline_barcode_2	B06	F05	none
i5_barcode	505	505	505
i7_barcode	701	701	702

Sequencing Information


Rep_UID	350_01	350_02	350_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/350.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	350	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
350.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	350	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=350)