ENCORE eCLIP:339

TAF15 eCLIP in K562

Experiment Information (Status: Released)

	339	339-control
Exp_UID	339	339
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR568DZW	ENCSR653CNZ
ENCODE_alias	gene-yeo:339	gene-yeo:339-control
RBP	TAF15	TAF15
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB249IHJ	ENCAB249IHJ
Antibody	A300-308A	A300-308A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	113	137

Replicate Information


Rep_UID	339_01	339_02	339_INPUT
Exp UID	339	339	339
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB854AFD	ENCLB731KNF	ENCLB394YRD
ENCODE_alias	gene-yeo:339_01	gene-yeo:339_02	gene-yeo:339_INPUT
Biosample Name	K562_040915	K562_022715	K562_040915
Biosample_ENCODE_Accession	ENCBS931MQO	ENCBS253VOZ	ENCBS931MQO
Biosample_ENCODE_Alias	gene-yeo:K562_040915	gene-yeo:K562_022715	gene-yeo:K562_040915
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-04-09	2015-02-27	2015-04-09
Culture_End_Date	2015-05-08	2015-03-23	2015-05-08
Passage	5	5	5

QC Stats

Experiment QC

	339	339-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	339_01	339_02	339_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	339_01	339_02	339_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	505	505	505
i7_barcode	702	702	701

Sequencing Information


Rep_UID	339_01	339_02	339_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/339.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	339	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
339.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	339	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=339)