RBM22      eCLIP in K562

Experiment Information (Status: Released)
331331-control
Exp_UID331331
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR295OKTENCSR344EGD
ENCODE_aliasgene-yeo:331gene-yeo:331-control
RBPRBM22RBM22
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB476CFSENCAB476CFS
AntibodyA303-923AA303-923A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID104128




Replicate Information
Rep_UID331_01331_02331_INPUT
Exp UID331331331
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB992PMHENCLB761BDTENCLB998OOV
ENCODE_aliasgene-yeo:331_01gene-yeo:331_02gene-yeo:331_INPUT
Biosample NameK562_022715K562_040915K562_040915
Biosample_ENCODE_AccessionENCBS253VOZENCBS931MQOENCBS931MQO
Biosample_ENCODE_Aliasgene-yeo:K562_022715gene-yeo:K562_040915gene-yeo:K562_040915
Cell_LineK562K562K562
Culture_Start_Date2015-02-272015-04-092015-04-09
Culture_End_Date2015-03-232015-05-082015-05-08
Passage555




QC Stats
Experiment QC
331331-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID331_01331_02331_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID331_01331_02331_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502502
i7_barcode705705706




Sequencing Information
Rep_UID331_01331_02331_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/331.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz331final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
331.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz331final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=331)