HNRNPK      eCLIP in K562

Experiment Information (Status: Released)
326326-control
Exp_UID326326
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR268ETUENCSR669DKA
ENCODE_aliasgene-yeo:326gene-yeo:326-control
RBPHNRNPKHNRNPK
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB000BFNENCAB000BFN
AntibodyRN019PRN019P
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID97121




Replicate Information
Rep_UID326_01326_02326_INPUT
Exp UID326326326
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB535CAMENCLB654MHUENCLB405GVM
ENCODE_aliasgene-yeo:326_01gene-yeo:326_02gene-yeo:326_INPUT
Biosample NameK562_110314K562_022715K562_110314
Biosample_ENCODE_AccessionENCBS081NLEENCBS253VOZENCBS081NLE
Biosample_ENCODE_Aliasgene-yeo:K562_110314gene-yeo:K562_022715gene-yeo:K562_110314
Cell_LineK562K562K562
Culture_Start_Date2014-10-062015-02-272014-10-06
Culture_End_Date2014-11-032015-03-232014-11-03
Passage656




QC Stats
Experiment QC
326326-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID326_01326_02326_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID326_01326_02326_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode506506506
i7_barcode706706705




Sequencing Information
Rep_UID326_01326_02326_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/326.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz326final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
326.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz326final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=326)