ENCORE eCLIP:325

LIN28B eCLIP in K562

Experiment Information (Status: Released)

	325	325-control
Exp_UID	325	325
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR970NKP	ENCSR399CBP
ENCODE_alias	gene-yeo:325	gene-yeo:325-control
RBP	LIN28B	LIN28B
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB006PLV	ENCAB006PLV
Antibody	A303-558A	A303-558A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	102	126

Replicate Information


Rep_UID	325_01	325_02	325_INPUT
Exp UID	325	325	325
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB736ETW	ENCLB914PVV	ENCLB326ZKU
ENCODE_alias	gene-yeo:325_01	gene-yeo:325_02	gene-yeo:325_INPUT
Biosample Name	K562_110314	K562_022715	K562_110314
Biosample_ENCODE_Accession	ENCBS081NLE	ENCBS253VOZ	ENCBS081NLE
Biosample_ENCODE_Alias	gene-yeo:K562_110314	gene-yeo:K562_022715	gene-yeo:K562_110314
Cell_Line	K562	K562	K562
Culture_Start_Date	2014-10-06	2015-02-27	2014-10-06
Culture_End_Date	2014-11-03	2015-03-23	2014-11-03
Passage	6	5	6

QC Stats

Experiment QC

	325	325-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	325_01	325_02	325_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	325_01	325_02	325_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	504	504	503
i7_barcode	704	704	704

Sequencing Information


Rep_UID	325_01	325_02	325_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/325.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	325	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
325.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	325	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=325)