ENCORE eCLIP:321

HNRNPUL1 eCLIP in HepG2

Experiment Information (Status: Released)

	321	321-control
Exp_UID	321	321
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR755TJC	ENCSR643JMB
ENCODE_alias	gene-yeo:321	gene-yeo:321-control
RBP	HNRNPUL1	HNRNPUL1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB962KAD	ENCAB962KAD
Antibody	A300-862A	A300-862A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	99	123

Replicate Information


Rep_UID	321_01	321_02	321_INPUT
Exp UID	321	321	321
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB863CAF	ENCLB955BHY	ENCLB477PPQ
ENCODE_alias	gene-yeo:321_01	gene-yeo:321_02	gene-yeo:321_INPUT
Biosample Name	HepG2_040915	HepG2_032015	HepG2_040915
Biosample_ENCODE_Accession	ENCBS362ASG	ENCBS548DJV	ENCBS362ASG
Biosample_ENCODE_Alias	gene-yeo:HepG2_040915	gene-yeo:HepG2_032015	gene-yeo:HepG2_040915
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-04-09	2015-02-27	2015-04-09
Culture_End_Date	2015-05-08	2015-03-20	2015-05-08
Passage	5	4	5

QC Stats

Experiment QC

	321	321-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	321_01	321_02	321_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	321_01	321_02	321_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	C01	A01	none
inline_barcode_2	D08fixed	B06	none
i5_barcode	506	506	506
i7_barcode	704	704	703

Sequencing Information


Rep_UID	321_01	321_02	321_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/321.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	321	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
321.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	321	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=321)