SND1      eCLIP in K562

Experiment Information (Status: Released)
316316-control
Exp_UID316316
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR128VXCENCSR435EVK
ENCODE_aliasgene-yeo:316gene-yeo:316-control
RBPSND1SND1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB484JUTENCAB484JUT
AntibodyA302-883AA302-883A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID109133




Replicate Information
Rep_UID316_01316_02316_INPUT
Exp UID316316316
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB524SNOENCLB025TEXENCLB537AQC
ENCODE_aliasgene-yeo:316_01gene-yeo:316_02gene-yeo:316_INPUT
Biosample NameK562_022315K562_110314K562_022315
Biosample_ENCODE_AccessionENCBS831COVENCBS081NLEENCBS831COV
Biosample_ENCODE_Aliasgene-yeo:K562_022315gene-yeo:K562_110314gene-yeo:K562_022315
Cell_LineK562K562K562
Culture_Start_Date2015-02-232014-10-062015-02-23
Culture_End_Date2015-03-202014-11-032015-03-20
Passage666




QC Stats
Experiment QC
316316-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID316_01316_02316_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID316_01316_02316_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode501501501
i7_barcode706706705




Sequencing Information
Rep_UID316_01316_02316_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/316.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz316final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
316.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz316final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=316)