FXR1      eCLIP in K562

Experiment Information (Status: Released)
315315-control
Exp_UID315315
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR774RFNENCSR562BJW
ENCODE_aliasgene-yeo:315gene-yeo:315-control
RBPFXR1FXR1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB162GMEENCAB162GME
AntibodyA303-892AA303-892A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID95119




Replicate Information
Rep_UID315_01315_02315_INPUT
Exp UID315315315
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB864ZXFENCLB689QLKENCLB499JUR
ENCODE_aliasgene-yeo:315_01gene-yeo:315_02gene-yeo:315_INPUT
Biosample NameK562_022315K562_110314K562_022315
Biosample_ENCODE_AccessionENCBS831COVENCBS081NLEENCBS831COV
Biosample_ENCODE_Aliasgene-yeo:K562_022315gene-yeo:K562_110314gene-yeo:K562_022315
Cell_LineK562K562K562
Culture_Start_Date2015-02-232014-10-062015-02-23
Culture_End_Date2015-03-202014-11-032015-03-20
Passage666




QC Stats
Experiment QC
315315-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID315_01315_02315_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID315_01315_02315_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A04A03none
inline_barcode_2F05G07none
i5_barcode502502502
i7_barcode704704703




Sequencing Information
Rep_UID315_01315_02315_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/315.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz315final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
315.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz315final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=315)